Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC22.65■■□□□ 1.22
USP54Q70EL1 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC22.65■■□□□ 1.22
USP54Q70EL1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC22.65■■□□□ 1.22
USP54Q70EL1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 RNA5SP421-201ENST00000516864 134 ntBASIC22.65■■□□□ 1.22
USP54Q70EL1 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC22.65■■□□□ 1.22
USP54Q70EL1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC22.65■■□□□ 1.22
USP54Q70EL1 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 AC100757.3-201ENST00000622361 1406 ntBASIC22.65■■□□□ 1.22
USP54Q70EL1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
USP54Q70EL1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
USP54Q70EL1 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
USP54Q70EL1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
USP54Q70EL1 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.64■■□□□ 1.22
USP54Q70EL1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
USP54Q70EL1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC22.64■■□□□ 1.21
USP54Q70EL1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC22.64■■□□□ 1.21
USP54Q70EL1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
USP54Q70EL1 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC22.64■■□□□ 1.21
USP54Q70EL1 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC22.64■■□□□ 1.21
USP54Q70EL1 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
USP54Q70EL1 PRYP6-201ENST00000514804 343 ntBASIC22.64■■□□□ 1.21
USP54Q70EL1 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC22.64■■□□□ 1.21
USP54Q70EL1 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC22.64■■□□□ 1.21
USP54Q70EL1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC22.64■■□□□ 1.21
USP54Q70EL1 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
USP54Q70EL1 AC108860.2-201ENST00000562760 2183 ntBASIC22.64■■□□□ 1.21
USP54Q70EL1 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 AL021920.2-201ENST00000624828 1351 ntBASIC22.64■■□□□ 1.21
USP54Q70EL1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP54Q70EL1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC22.63■■□□□ 1.21
USP54Q70EL1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC22.63■■□□□ 1.21
USP54Q70EL1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
USP54Q70EL1 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC22.63■■□□□ 1.21
USP54Q70EL1 AC097493.3-201ENST00000509725 367 ntBASIC22.63■■□□□ 1.21
USP54Q70EL1 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC22.63■■□□□ 1.21
USP54Q70EL1 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC22.63■■□□□ 1.21
USP54Q70EL1 AC021097.1-201ENST00000607902 574 ntBASIC22.63■■□□□ 1.21
USP54Q70EL1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
USP54Q70EL1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC22.63■■□□□ 1.21
USP54Q70EL1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP54Q70EL1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 CALY-202ENST00000368555 783 ntTSL 2 BASIC22.62■■□□□ 1.21
USP54Q70EL1 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC22.62■■□□□ 1.21
USP54Q70EL1 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC22.62■■□□□ 1.21
USP54Q70EL1 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC22.62■■□□□ 1.21
USP54Q70EL1 AC239800.4-201ENST00000603712 296 ntBASIC22.62■■□□□ 1.21
USP54Q70EL1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 SLC9A3P2-201ENST00000447821 2021 ntBASIC22.62■■□□□ 1.21
USP54Q70EL1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC22.62■■□□□ 1.21
USP54Q70EL1 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
USP54Q70EL1 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC22.62■■□□□ 1.21
USP54Q70EL1 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC22.62■■□□□ 1.21
USP54Q70EL1 IGHV3-62-201ENST00000520057 340 ntBASIC22.62■■□□□ 1.21
USP54Q70EL1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms