Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC096734.2-201ENST00000562054 433 ntBASIC17.53■□□□□ 0.4
USP39Q53GS9 PDPK2P-202ENST00000562415 1191 ntBASIC17.53■□□□□ 0.4
USP39Q53GS9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.53■□□□□ 0.4
USP39Q53GS9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.53■□□□□ 0.4
USP39Q53GS9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
USP39Q53GS9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 AC004877.2-201ENST00000623941 599 ntBASIC17.53■□□□□ 0.4
USP39Q53GS9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
USP39Q53GS9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
USP39Q53GS9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.52■□□□□ 0.4
USP39Q53GS9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 BCAR1-209ENST00000546196 1340 ntBASIC17.52■□□□□ 0.4
USP39Q53GS9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.52■□□□□ 0.4
USP39Q53GS9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
USP39Q53GS9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
USP39Q53GS9 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
USP39Q53GS9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.52■□□□□ 0.4
USP39Q53GS9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.52■□□□□ 0.4
USP39Q53GS9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.52■□□□□ 0.4
USP39Q53GS9 ACTG1P14-201ENST00000446382 1122 ntBASIC17.52■□□□□ 0.4
USP39Q53GS9 AC116407.2-201ENST00000613639 860 ntBASIC17.52■□□□□ 0.4
USP39Q53GS9 AC106028.4-201ENST00000614509 607 ntBASIC17.52■□□□□ 0.4
USP39Q53GS9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
USP39Q53GS9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
USP39Q53GS9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.52■□□□□ 0.4
USP39Q53GS9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP39Q53GS9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP39Q53GS9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
USP39Q53GS9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.52■□□□□ 0.39
USP39Q53GS9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP39Q53GS9 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP39Q53GS9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP39Q53GS9 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP39Q53GS9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.52■□□□□ 0.39
USP39Q53GS9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.51■□□□□ 0.39
USP39Q53GS9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USP39Q53GS9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 MIR770-201ENST00000390219 98 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.51■□□□□ 0.39
USP39Q53GS9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 FAM8A3P-201ENST00000427218 844 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.51■□□□□ 0.39
USP39Q53GS9 STK19B-204ENST00000512515 211 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 IGHV3-52-201ENST00000519770 353 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.51■□□□□ 0.39
USP39Q53GS9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.51■□□□□ 0.39
USP39Q53GS9 AC011467.4-201ENST00000594891 528 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 LINC00896-202ENST00000609602 2128 ntBASIC17.51■□□□□ 0.39
USP39Q53GS9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
USP39Q53GS9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP39Q53GS9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms