Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HIST1H1AQ02539 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 AL353692.3-201ENST00000407031 1396 ntBASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 AC112907.2-201ENST00000448639 330 ntBASIC13.26□□□□□ -0.29
HIST1H1AQ02539 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.26□□□□□ -0.29
HIST1H1AQ02539 GPR32P1-201ENST00000601788 811 ntBASIC13.26□□□□□ -0.29
HIST1H1AQ02539 LINC01023-201ENST00000606054 436 ntBASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIST1H1AQ02539 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 AC073508.3-201ENST00000619697 1419 ntBASIC13.25□□□□□ -0.29
HIST1H1AQ02539 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 AC211429.1-201ENST00000415277 523 ntBASIC13.25□□□□□ -0.29
HIST1H1AQ02539 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 KRT18P38-201ENST00000449496 1282 ntBASIC13.25□□□□□ -0.29
HIST1H1AQ02539 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIST1H1AQ02539 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms