Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 RCN1P2-201ENST00000398357 915 ntBASIC16.25■□□□□ 0.19
RFX3P48380 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
RFX3P48380 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.25■□□□□ 0.19
RFX3P48380 FOSL1P1-201ENST00000511041 816 ntBASIC16.25■□□□□ 0.19
RFX3P48380 AC111152.3-201ENST00000569699 673 ntBASIC16.25■□□□□ 0.19
RFX3P48380 MIR3652-201ENST00000579335 131 ntBASIC16.25■□□□□ 0.19
RFX3P48380 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.25■□□□□ 0.19
RFX3P48380 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.24■□□□□ 0.19
RFX3P48380 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.24■□□□□ 0.19
RFX3P48380 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.24■□□□□ 0.19
RFX3P48380 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
RFX3P48380 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.24■□□□□ 0.19
RFX3P48380 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.24■□□□□ 0.19
RFX3P48380 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 AL138688.1-201ENST00000624851 1594 ntBASIC16.24■□□□□ 0.19
RFX3P48380 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
RFX3P48380 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.24■□□□□ 0.19
RFX3P48380 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
RFX3P48380 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RFX3P48380 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX3P48380 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 AL023806.1-201ENST00000603994 1649 ntBASIC16.23■□□□□ 0.19
RFX3P48380 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RFX3P48380 AC084018.2-201ENST00000613093 2607 ntBASIC16.23■□□□□ 0.19
RFX3P48380 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX3P48380 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX3P48380 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX3P48380 PRELID1P1-202ENST00000567272 903 ntBASIC16.23■□□□□ 0.19
RFX3P48380 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.23■□□□□ 0.19
RFX3P48380 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.23■□□□□ 0.19
RFX3P48380 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX3P48380 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RFX3P48380 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RFX3P48380 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
RFX3P48380 AC108860.2-201ENST00000562760 2183 ntBASIC16.23■□□□□ 0.19
RFX3P48380 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX3P48380 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX3P48380 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX3P48380 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms