Protein–RNA interactions for Protein: P48065

SLC6A12, Sodium- and chloride-dependent betaine transporter, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A12P48065 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SLC6A12P48065 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SLC6A12P48065 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.61■□□□□ 0.25
SLC6A12P48065 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.61■□□□□ 0.25
SLC6A12P48065 IFNL4P1-201ENST00000607083 540 ntBASIC16.61■□□□□ 0.25
SLC6A12P48065 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC6A12P48065 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC6A12P48065 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A12P48065 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC6A12P48065 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC6A12P48065 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.61■□□□□ 0.25
SLC6A12P48065 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.6■□□□□ 0.25
SLC6A12P48065 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.6■□□□□ 0.25
SLC6A12P48065 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.6■□□□□ 0.25
SLC6A12P48065 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.6■□□□□ 0.25
SLC6A12P48065 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.6■□□□□ 0.25
SLC6A12P48065 MTDHP4-201ENST00000600287 670 ntBASIC16.6■□□□□ 0.25
SLC6A12P48065 AL139424.1-201ENST00000607572 797 ntBASIC16.6■□□□□ 0.25
SLC6A12P48065 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
SLC6A12P48065 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.6■□□□□ 0.25
SLC6A12P48065 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC6A12P48065 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SLC6A12P48065 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
SLC6A12P48065 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A12P48065 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.59■□□□□ 0.25
SLC6A12P48065 AC078925.2-201ENST00000624013 1973 ntBASIC16.59■□□□□ 0.25
SLC6A12P48065 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.59■□□□□ 0.25
SLC6A12P48065 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
SLC6A12P48065 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A12P48065 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 SCARNA2-201ENST00000458748 420 ntBASIC16.59■□□□□ 0.25
SLC6A12P48065 UNC93B7-201ENST00000509439 705 ntBASIC16.59■□□□□ 0.25
SLC6A12P48065 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 LINC01711-201ENST00000598340 967 ntBASIC16.59■□□□□ 0.25
SLC6A12P48065 AC025062.2-201ENST00000605477 670 ntBASIC16.59■□□□□ 0.25
SLC6A12P48065 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A12P48065 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.59■□□□□ 0.25
SLC6A12P48065 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A12P48065 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A12P48065 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A12P48065 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.58■□□□□ 0.25
SLC6A12P48065 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A12P48065 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
SLC6A12P48065 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
SLC6A12P48065 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A12P48065 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A12P48065 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A12P48065 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.58■□□□□ 0.24
SLC6A12P48065 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.58■□□□□ 0.24
SLC6A12P48065 AC139887.3-201ENST00000568585 713 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms