Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.15□□□□□ -0.14
CDX1P47902 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.15□□□□□ -0.14
CDX1P47902 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
CDX1P47902 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.15
CDX1P47902 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.15□□□□□ -0.15
CDX1P47902 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.14□□□□□ -0.15
CDX1P47902 AL353692.3-201ENST00000407031 1396 ntBASIC14.14□□□□□ -0.15
CDX1P47902 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CDX1P47902 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.14□□□□□ -0.15
CDX1P47902 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.14□□□□□ -0.15
CDX1P47902 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.14□□□□□ -0.15
CDX1P47902 AC092119.3-201ENST00000612618 583 ntBASIC14.14□□□□□ -0.15
CDX1P47902 IGHV3-41-201ENST00000613121 348 ntBASIC14.14□□□□□ -0.15
CDX1P47902 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.14□□□□□ -0.15
CDX1P47902 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.14□□□□□ -0.15
CDX1P47902 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.14□□□□□ -0.15
CDX1P47902 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 KRT18P1-202ENST00000452408 1331 ntBASIC14.14□□□□□ -0.15
CDX1P47902 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDX1P47902 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CDX1P47902 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CDX1P47902 AL499627.1-201ENST00000569373 2188 ntBASIC14.13□□□□□ -0.15
CDX1P47902 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 AC099063.4-201ENST00000641099 1602 ntBASIC14.13□□□□□ -0.15
CDX1P47902 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.13□□□□□ -0.15
CDX1P47902 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 DRAXINP1-201ENST00000437611 948 ntBASIC14.13□□□□□ -0.15
CDX1P47902 AP002383.4-201ENST00000442518 975 ntBASIC14.13□□□□□ -0.15
CDX1P47902 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.13□□□□□ -0.15
CDX1P47902 MIR3180-1-201ENST00000580374 94 ntBASIC14.13□□□□□ -0.15
CDX1P47902 MIR3180-3-201ENST00000584616 94 ntBASIC14.13□□□□□ -0.15
CDX1P47902 AP002414.4-201ENST00000589764 1148 ntBASIC14.13□□□□□ -0.15
CDX1P47902 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.13□□□□□ -0.15
CDX1P47902 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.13□□□□□ -0.15
CDX1P47902 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.13□□□□□ -0.15
CDX1P47902 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 AC026691.1-201ENST00000602502 2017 ntBASIC14.13□□□□□ -0.15
CDX1P47902 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms