Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.56■□□□□ 0.24
SEMA3DO95025 ABCD1P5-201ENST00000445663 754 ntBASIC16.56■□□□□ 0.24
SEMA3DO95025 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.56■□□□□ 0.24
SEMA3DO95025 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.56■□□□□ 0.24
SEMA3DO95025 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 SIGLEC16-201ENST00000599858 1437 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.55■□□□□ 0.24
SEMA3DO95025 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.55■□□□□ 0.24
SEMA3DO95025 SPDYE21P-201ENST00000413323 827 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 AL020989.1-201ENST00000422979 469 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 NUS1P1-201ENST00000446295 882 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.55■□□□□ 0.24
SEMA3DO95025 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 AL591684.3-201ENST00000605187 298 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 AC073592.4-201ENST00000623827 446 ntBASIC16.55■□□□□ 0.24
SEMA3DO95025 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SEMA3DO95025 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SEMA3DO95025 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SEMA3DO95025 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.54■□□□□ 0.24
SEMA3DO95025 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 HCG4P8-203ENST00000443049 980 ntBASIC16.54■□□□□ 0.24
SEMA3DO95025 SIGLEC30P-201ENST00000455569 941 ntBASIC16.54■□□□□ 0.24
SEMA3DO95025 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.54■□□□□ 0.24
SEMA3DO95025 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.54■□□□□ 0.24
SEMA3DO95025 AC138894.3-201ENST00000603787 634 ntBASIC16.54■□□□□ 0.24
SEMA3DO95025 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.54■□□□□ 0.24
SEMA3DO95025 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.54■□□□□ 0.24
SEMA3DO95025 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.54■□□□□ 0.24
SEMA3DO95025 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SEMA3DO95025 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SEMA3DO95025 EGFEM1P-202ENST00000431685 1563 ntBASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms