Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 ALG1L5P-201ENST00000482043 771 ntBASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMIM28A0A1B0GU29 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.39■□□□□ 0.54
SMIM28A0A1B0GU29 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 YBX1P5-201ENST00000509441 847 ntBASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 AC134684.3-201ENST00000641758 218 ntBASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 PP12613-201ENST00000424958 2230 ntBASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMIM28A0A1B0GU29 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 HTR5BP-201ENST00000430851 1154 ntBASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 AL078644.1-201ENST00000609881 752 ntBASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms