Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AL031133.1-201ENST00000406807 723 ntBASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 TSPY22P-201ENST00000427496 604 ntBASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AL121956.5-201ENST00000625261 221 ntBASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AC026691.1-201ENST00000602502 2017 ntBASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC39Q9UFE4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 AC011498.5-201ENST00000592027 486 ntBASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 LINC01451-201ENST00000623792 534 ntBASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC39Q9UFE4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC39Q9UFE4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 NTF6B-201ENST00000591913 560 ntBASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms