Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 STK19B-204ENST00000512515 211 ntBASIC16.87■□□□□ 0.29
VPS13AQ96RL7 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AL583810.1-201ENST00000553344 1045 ntBASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AL355994.2-201ENST00000447882 704 ntBASIC16.86■□□□□ 0.29
VPS13AQ96RL7 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13AQ96RL7 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AP006294.1-201ENST00000415407 339 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC022210.1-201ENST00000449856 793 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 BNIP3P42-201ENST00000454982 569 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC109635.5-201ENST00000533593 962 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 BNIP3P29-201ENST00000598302 571 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 CHCHD2P3-201ENST00000603038 451 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AC011447.5-201ENST00000616168 564 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 AL161645.1-201ENST00000622716 1255 ntBASIC16.85■□□□□ 0.29
VPS13AQ96RL7 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS13AQ96RL7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 DFFBP1-201ENST00000433250 979 ntBASIC16.84■□□□□ 0.29
VPS13AQ96RL7 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 AC008735.3-201ENST00000596646 500 ntBASIC16.84■□□□□ 0.29
VPS13AQ96RL7 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms