Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.19■□□□□ 0.82
TRIM47Q96LD4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 GNAS-203ENST00000306120 1878 ntBASIC20.18■□□□□ 0.82
TRIM47Q96LD4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 SLC25A6P5-201ENST00000435663 894 ntBASIC20.18■□□□□ 0.82
TRIM47Q96LD4 FAM58CP-201ENST00000435741 640 ntBASIC20.18■□□□□ 0.82
TRIM47Q96LD4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AC010654.1-201ENST00000615722 808 ntBASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 AC132938.5-201ENST00000624980 1813 ntBASIC20.18■□□□□ 0.82
TRIM47Q96LD4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM47Q96LD4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 SIRPAP1-201ENST00000448467 1770 ntBASIC20.17■□□□□ 0.82
TRIM47Q96LD4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 AC096734.2-201ENST00000562054 433 ntBASIC20.17■□□□□ 0.82
TRIM47Q96LD4 AC004449.1-201ENST00000564240 433 ntBASIC20.17■□□□□ 0.82
TRIM47Q96LD4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM47Q96LD4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 AP000997.3-201ENST00000623333 2250 ntBASIC20.16■□□□□ 0.82
TRIM47Q96LD4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 ACTG1P14-201ENST00000446382 1122 ntBASIC20.16■□□□□ 0.82
TRIM47Q96LD4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 PAWRP1-201ENST00000451083 565 ntBASIC20.16■□□□□ 0.82
TRIM47Q96LD4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.16■□□□□ 0.82
TRIM47Q96LD4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms