Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 RBM17P3-201ENST00000417687 1192 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AL662844.1-201ENST00000546340 181 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AC012640.2-201ENST00000561606 901 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AC109462.3-201ENST00000573934 613 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AC108860.2-201ENST00000562760 2183 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 AC012313.1-201ENST00000593393 3059 ntBASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP4CQ96CF2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 IL9RP2-201ENST00000423948 1312 ntBASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 AP000867.4-201ENST00000641616 219 ntBASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 PP12613-201ENST00000424958 2230 ntBASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 LYSMD4-203ENST00000378904 2122 ntBASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP4CQ96CF2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 AC018712.1-201ENST00000455767 687 ntBASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 MTDHP4-201ENST00000600287 670 ntBASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 AC073592.5-201ENST00000624854 528 ntBASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 FAM215A-202ENST00000632077 792 ntBASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 AF228730.7-201ENST00000641842 219 ntBASIC20.58■□□□□ 0.89
CHMP4CQ96CF2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP4CQ96CF2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AL121761.2-201ENST00000598007 1648 ntBASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AC148477.5-201ENST00000625164 1645 ntBASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 MIR940-201ENST00000401276 94 ntBASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AC025062.2-201ENST00000605477 670 ntBASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms