Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.62■□□□□ 0.73
ERCC4Q92889 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ERCC4Q92889 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.62■□□□□ 0.73
ERCC4Q92889 COX5BP2-201ENST00000392354 334 ntBASIC19.62■□□□□ 0.73
ERCC4Q92889 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
ERCC4Q92889 AL845331.1-201ENST00000424978 1190 ntBASIC19.62■□□□□ 0.73
ERCC4Q92889 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.62■□□□□ 0.73
ERCC4Q92889 AC109462.3-201ENST00000573934 613 ntBASIC19.62■□□□□ 0.73
ERCC4Q92889 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.62■□□□□ 0.73
ERCC4Q92889 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.62■□□□□ 0.73
ERCC4Q92889 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.62■□□□□ 0.73
ERCC4Q92889 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.62■□□□□ 0.73
ERCC4Q92889 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.62■□□□□ 0.73
ERCC4Q92889 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.62■□□□□ 0.73
ERCC4Q92889 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
ERCC4Q92889 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.61■□□□□ 0.73
ERCC4Q92889 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.61■□□□□ 0.73
ERCC4Q92889 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.61■□□□□ 0.73
ERCC4Q92889 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ERCC4Q92889 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ERCC4Q92889 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.61■□□□□ 0.73
ERCC4Q92889 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ERCC4Q92889 AL662844.4-201ENST00000606367 2838 ntBASIC19.61■□□□□ 0.73
ERCC4Q92889 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ERCC4Q92889 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.6■□□□□ 0.73
ERCC4Q92889 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.6■□□□□ 0.73
ERCC4Q92889 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.6■□□□□ 0.73
ERCC4Q92889 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.6■□□□□ 0.73
ERCC4Q92889 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 AC092647.4-201ENST00000457211 535 ntBASIC19.6■□□□□ 0.73
ERCC4Q92889 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.6■□□□□ 0.73
ERCC4Q92889 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.6■□□□□ 0.73
ERCC4Q92889 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
ERCC4Q92889 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 AC078925.2-201ENST00000624013 1973 ntBASIC19.6■□□□□ 0.73
ERCC4Q92889 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ERCC4Q92889 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ERCC4Q92889 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.6■□□□□ 0.73
ERCC4Q92889 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.59■□□□□ 0.73
ERCC4Q92889 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms