Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 TMPOP1-202ENST00000424642 1267 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 KRT8P26-201ENST00000534154 1276 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AL136038.3-201ENST00000561909 1096 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AC111152.3-201ENST00000569699 673 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AP005901.3-202ENST00000581653 237 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AL135999.2-201ENST00000622438 1686 ntBASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATG4AQ8WYN0 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 LINC01238-205ENST00000567549 1107 ntBASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATG4AQ8WYN0 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 AL353593.2-201ENST00000602529 1483 ntBASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 AC103564.2-201ENST00000432853 1299 ntBASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ATG4AQ8WYN0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms