Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 PMS2P7-201ENST00000506558 1336 ntBASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM3Q8TF72 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 AL121761.2-201ENST00000598007 1648 ntBASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 BX842568.4-201ENST00000421222 227 ntBASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 PRYP5-201ENST00000451909 266 ntBASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM3Q8TF72 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 AC006504.4-201ENST00000592118 1568 ntBASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 RPS8P6-201ENST00000426177 609 ntBASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM3Q8TF72 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHROOM3Q8TF72 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms