Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 PTCHD3P3-201ENST00000403073 906 ntBASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 MIR4469-201ENST00000583919 79 ntBASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-3Q8TAU0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 NCF1C-201ENST00000438382 1427 ntBASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 CNN2P11-201ENST00000429351 262 ntBASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 MIR1199-201ENST00000621445 119 ntBASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-3Q8TAU0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 ACTG1P4-201ENST00000425123 1122 ntBASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AC093525.9-201ENST00000624961 1746 ntBASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 AC020763.4-201ENST00000623414 4170 ntBASIC20.35■□□□□ 0.85
NKX2-3Q8TAU0 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms