Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AL139327.4-201ENST00000612362 153 ntBASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AC106028.4-201ENST00000614509 607 ntBASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 CNN2P11-201ENST00000429351 262 ntBASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 AL022326.1-202ENST00000641533 845 ntBASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.73■□□□□ 0.75
SH3RF1Q7Z6J0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 AC116353.5-201ENST00000638148 1699 ntBASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 AC002558.1-201ENST00000488906 803 ntBASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SH3RF1Q7Z6J0 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 SLC25A1P3-201ENST00000395415 828 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AP002472.1-201ENST00000577490 586 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AC019129.2-201ENST00000609837 1235 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms