Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 AL139288.1-201ENST00000623748 933 ntBASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 AC073592.4-201ENST00000623827 446 ntBASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SYNE3Q6ZMZ3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 AL450487.1-201ENST00000426799 995 ntBASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.33■□□□□ 0.85
SYNE3Q6ZMZ3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.33■□□□□ 0.84
SYNE3Q6ZMZ3 AC148477.5-201ENST00000625164 1645 ntBASIC20.33■□□□□ 0.84
SYNE3Q6ZMZ3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.33■□□□□ 0.84
SYNE3Q6ZMZ3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
SYNE3Q6ZMZ3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
SYNE3Q6ZMZ3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 AKR1C7P-201ENST00000305623 895 ntBASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 PRYP5-201ENST00000451909 266 ntBASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 BX005266.1-201ENST00000473402 457 ntBASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 NKAPP1-205ENST00000585790 367 ntBASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE3Q6ZMZ3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 FGFR3P6-201ENST00000457012 610 ntBASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 AF238378.1-201ENST00000526806 358 ntBASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 AL691432.3-201ENST00000621860 400 ntBASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 AL022326.1-202ENST00000641533 845 ntBASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms