Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL121761.2-201ENST00000598007 1648 ntBASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 AL355306.1-201ENST00000415580 579 ntBASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 TIMM8BP1-201ENST00000452384 211 ntBASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 AC134043.2-201ENST00000624206 2238 ntBASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 AC020763.4-201ENST00000623414 4170 ntBASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.02■□□□□ 0.79
SHROOM1Q2M3G4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 AC004835.2-201ENST00000603762 682 ntBASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 AC067852.2-201ENST00000590513 2313 ntBASIC20.01■□□□□ 0.79
SHROOM1Q2M3G4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 HMGA1P7-201ENST00000406908 502 ntBASIC20■□□□□ 0.79
SHROOM1Q2M3G4 AC140658.5-201ENST00000438532 169 ntBASIC20■□□□□ 0.79
SHROOM1Q2M3G4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20■□□□□ 0.79
SHROOM1Q2M3G4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 SLC25A6P5-201ENST00000435663 894 ntBASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHROOM1Q2M3G4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms