Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 CETN4P-206ENST00000642099 2168 ntBASIC10.53□□□□□ -0.72
HSPG2P98160 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC10.53□□□□□ -0.72
HSPG2P98160 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
HSPG2P98160 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 RPL28-204ENST00000431533 590 ntTSL 2 BASIC10.52□□□□□ -0.72
HSPG2P98160 COG4-212ENST00000564653 590 ntTSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC10.52□□□□□ -0.72
HSPG2P98160 AC010319.3-201ENST00000597028 470 ntBASIC10.52□□□□□ -0.72
HSPG2P98160 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC10.52□□□□□ -0.72
HSPG2P98160 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC10.52□□□□□ -0.72
HSPG2P98160 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC10.52□□□□□ -0.72
HSPG2P98160 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC10.52□□□□□ -0.72
HSPG2P98160 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
HSPG2P98160 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
HSPG2P98160 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 LINC00896-202ENST00000609602 2128 ntBASIC10.52□□□□□ -0.73
HSPG2P98160 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
HSPG2P98160 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
HSPG2P98160 AC015936.2-201ENST00000593177 259 ntBASIC10.52□□□□□ -0.73
HSPG2P98160 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC10.52□□□□□ -0.73
HSPG2P98160 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 AC073130.3-201ENST00000624389 2278 ntBASIC10.52□□□□□ -0.73
HSPG2P98160 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC10.52□□□□□ -0.73
HSPG2P98160 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
HSPG2P98160 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC10.52□□□□□ -0.73
HSPG2P98160 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC10.52□□□□□ -0.73
HSPG2P98160 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC10.52□□□□□ -0.73
HSPG2P98160 IGHV3-52-201ENST00000519770 353 ntBASIC10.52□□□□□ -0.73
HSPG2P98160 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC10.52□□□□□ -0.73
HSPG2P98160 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC10.52□□□□□ -0.73
HSPG2P98160 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC10.52□□□□□ -0.73
HSPG2P98160 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC10.52□□□□□ -0.73
HSPG2P98160 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
HSPG2P98160 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC10.52□□□□□ -0.73
HSPG2P98160 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
HSPG2P98160 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC10.51□□□□□ -0.73
HSPG2P98160 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC10.51□□□□□ -0.73
HSPG2P98160 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
HSPG2P98160 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC10.51□□□□□ -0.73
HSPG2P98160 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC10.51□□□□□ -0.73
HSPG2P98160 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC10.51□□□□□ -0.73
HSPG2P98160 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
HSPG2P98160 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC10.51□□□□□ -0.73
HSPG2P98160 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC10.51□□□□□ -0.73
HSPG2P98160 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC10.51□□□□□ -0.73
HSPG2P98160 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC10.51□□□□□ -0.73
HSPG2P98160 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC10.51□□□□□ -0.73
HSPG2P98160 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC10.51□□□□□ -0.73
HSPG2P98160 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC10.51□□□□□ -0.73
HSPG2P98160 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
HSPG2P98160 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
HSPG2P98160 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms