Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX1P83916 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX1P83916 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CBX1P83916 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.06■□□□□ 0.48
CBX1P83916 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.06■□□□□ 0.48
CBX1P83916 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.06■□□□□ 0.48
CBX1P83916 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 KRT18P14-201ENST00000534205 1250 ntBASIC18.06■□□□□ 0.48
CBX1P83916 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.06■□□□□ 0.48
CBX1P83916 AC142381.2-201ENST00000566120 298 ntBASIC18.06■□□□□ 0.48
CBX1P83916 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.06■□□□□ 0.48
CBX1P83916 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.06■□□□□ 0.48
CBX1P83916 AC010536.3-201ENST00000620306 533 ntBASIC18.06■□□□□ 0.48
CBX1P83916 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CBX1P83916 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 AC023157.3-201ENST00000619086 2088 ntBASIC18.06■□□□□ 0.48
CBX1P83916 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CBX1P83916 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX1P83916 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CBX1P83916 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CBX1P83916 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX1P83916 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CBX1P83916 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX1P83916 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CBX1P83916 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.05■□□□□ 0.48
CBX1P83916 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX1P83916 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.05■□□□□ 0.48
CBX1P83916 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.05■□□□□ 0.48
CBX1P83916 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX1P83916 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX1P83916 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX1P83916 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX1P83916 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX1P83916 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX1P83916 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX1P83916 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX1P83916 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX1P83916 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX1P83916 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX1P83916 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.04■□□□□ 0.48
CBX1P83916 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms