Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.05■□□□□ 0.32
SRP54P61011 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.05■□□□□ 0.32
SRP54P61011 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
SRP54P61011 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SRP54P61011 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 AL135999.2-201ENST00000622438 1686 ntBASIC17.04■□□□□ 0.32
SRP54P61011 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 AC006116.8-202ENST00000587620 1550 ntBASIC17.04■□□□□ 0.32
SRP54P61011 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
SRP54P61011 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SRP54P61011 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 AC023274.1-201ENST00000418278 595 ntBASIC17.04■□□□□ 0.32
SRP54P61011 SLC25A6P5-201ENST00000435663 894 ntBASIC17.04■□□□□ 0.32
SRP54P61011 KRT18P2-201ENST00000447938 1258 ntBASIC17.04■□□□□ 0.32
SRP54P61011 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.04■□□□□ 0.32
SRP54P61011 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.04■□□□□ 0.32
SRP54P61011 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 AC012317.2-201ENST00000623305 2251 ntBASIC17.04■□□□□ 0.32
SRP54P61011 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SRP54P61011 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.04■□□□□ 0.32
SRP54P61011 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.03■□□□□ 0.32
SRP54P61011 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SRP54P61011 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.03■□□□□ 0.32
SRP54P61011 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
SRP54P61011 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 YBX2P1-201ENST00000394192 760 ntBASIC17.03■□□□□ 0.32
SRP54P61011 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 AC002347.1-201ENST00000569543 541 ntBASIC17.03■□□□□ 0.32
SRP54P61011 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 GGTLC5P-201ENST00000617623 998 ntBASIC17.03■□□□□ 0.32
SRP54P61011 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.03■□□□□ 0.32
SRP54P61011 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.03■□□□□ 0.32
SRP54P61011 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP54P61011 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SRP54P61011 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP54P61011 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP54P61011 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
SRP54P61011 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 PCDHB18P-201ENST00000524813 2368 ntBASIC17.02■□□□□ 0.32
SRP54P61011 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms