Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA3P55318 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
FOXA3P55318 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.02□□□□□ -0.32
FOXA3P55318 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA3P55318 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA3P55318 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.02□□□□□ -0.33
FOXA3P55318 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 AL355355.2-201ENST00000442321 338 ntBASIC13.02□□□□□ -0.33
FOXA3P55318 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.02□□□□□ -0.33
FOXA3P55318 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.02□□□□□ -0.33
FOXA3P55318 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
FOXA3P55318 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.02□□□□□ -0.33
FOXA3P55318 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC13.02□□□□□ -0.33
FOXA3P55318 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.02□□□□□ -0.33
FOXA3P55318 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
FOXA3P55318 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
FOXA3P55318 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FOXA3P55318 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 RNF216P1-203ENST00000404404 2427 ntBASIC13.01□□□□□ -0.33
FOXA3P55318 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
FOXA3P55318 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
FOXA3P55318 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.01□□□□□ -0.33
FOXA3P55318 AC073195.1-201ENST00000607241 877 ntBASIC13.01□□□□□ -0.33
FOXA3P55318 DGCR10-201ENST00000609839 495 ntBASIC13.01□□□□□ -0.33
FOXA3P55318 AL109923.1-201ENST00000618799 583 ntBASIC13.01□□□□□ -0.33
FOXA3P55318 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.01□□□□□ -0.33
FOXA3P55318 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
FOXA3P55318 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.01□□□□□ -0.33
FOXA3P55318 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
FOXA3P55318 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
FOXA3P55318 AL161772.1-201ENST00000610494 4412 ntBASIC13.01□□□□□ -0.33
FOXA3P55318 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms