Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 AL049757.1-201ENST00000616842 1596 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LIMK1P53667 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIMK1P53667 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMK1P53667 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMK1P53667 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 MEIS3P1-201ENST00000495167 958 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 FAM86C2P-203ENST00000528684 1004 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
LIMK1P53667 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 AC027307.3-201ENST00000594262 1100 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 AC026120.1-201ENST00000611536 926 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.03■□□□□ 0.32
LIMK1P53667 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
LIMK1P53667 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 AC126763.1-201ENST00000552015 2118 ntBASIC17.03■□□□□ 0.32
LIMK1P53667 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMK1P53667 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMK1P53667 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMK1P53667 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMK1P53667 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LIMK1P53667 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMK1P53667 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.02■□□□□ 0.32
LIMK1P53667 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LIMK1P53667 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LIMK1P53667 AC002056.1-201ENST00000395613 760 ntBASIC17.02■□□□□ 0.32
LIMK1P53667 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMK1P53667 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.02■□□□□ 0.32
LIMK1P53667 AC069335.1-201ENST00000489972 472 ntBASIC17.02■□□□□ 0.32
LIMK1P53667 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LIMK1P53667 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
LIMK1P53667 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.02■□□□□ 0.32
LIMK1P53667 LINC02560-201ENST00000596379 459 ntBASIC17.02■□□□□ 0.32
LIMK1P53667 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LIMK1P53667 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMK1P53667 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LIMK1P53667 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMK1P53667 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
LIMK1P53667 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMK1P53667 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LIMK1P53667 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMK1P53667 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 MIR943-201ENST00000401286 94 ntBASIC17.01■□□□□ 0.31
LIMK1P53667 KLF2P3-201ENST00000451977 1087 ntBASIC17.01■□□□□ 0.31
LIMK1P53667 TIMM8BP1-201ENST00000452384 211 ntBASIC17.01■□□□□ 0.31
LIMK1P53667 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMK1P53667 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LIMK1P53667 AP001059.3-201ENST00000619053 235 ntBASIC17.01■□□□□ 0.31
LIMK1P53667 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMK1P53667 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMK1P53667 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMK1P53667 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMK1P53667 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms