Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
HTTP42858 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 AC142381.1-201ENST00000426099 345 ntBASIC19.16■□□□□ 0.66
HTTP42858 MIR4515-201ENST00000584082 81 ntBASIC19.16■□□□□ 0.66
HTTP42858 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 AC104581.1-202ENST00000635932 2618 ntBASIC19.16■□□□□ 0.66
HTTP42858 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.16■□□□□ 0.66
HTTP42858 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 IGHV3-62-201ENST00000520057 340 ntBASIC19.16■□□□□ 0.66
HTTP42858 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 MIR3909-201ENST00000579518 119 ntBASIC19.16■□□□□ 0.66
HTTP42858 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC19.16■□□□□ 0.66
HTTP42858 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HTTP42858 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HTTP42858 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.15■□□□□ 0.66
HTTP42858 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.15■□□□□ 0.66
HTTP42858 HLA-V-204ENST00000476601 1289 ntBASIC19.15■□□□□ 0.66
HTTP42858 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.15■□□□□ 0.66
HTTP42858 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.15■□□□□ 0.66
HTTP42858 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HTTP42858 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HTTP42858 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 AL080243.2-201ENST00000418783 582 ntBASIC19.15■□□□□ 0.66
HTTP42858 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.15■□□□□ 0.66
HTTP42858 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.15■□□□□ 0.66
HTTP42858 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
HTTP42858 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HTTP42858 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HTTP42858 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.14■□□□□ 0.66
HTTP42858 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
HTTP42858 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HTTP42858 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.14■□□□□ 0.66
HTTP42858 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HTTP42858 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.14■□□□□ 0.66
HTTP42858 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
HTTP42858 AL133338.1-201ENST00000565695 1517 ntBASIC19.14■□□□□ 0.66
HTTP42858 AC018529.1-201ENST00000613063 361 ntBASIC19.14■□□□□ 0.66
HTTP42858 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC19.14■□□□□ 0.66
HTTP42858 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 AC012569.1-201ENST00000591191 1524 ntBASIC19.14■□□□□ 0.65
HTTP42858 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.14■□□□□ 0.65
HTTP42858 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.14■□□□□ 0.65
HTTP42858 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 AP3S2-216ENST00000617003 1561 ntBASIC19.14■□□□□ 0.65
HTTP42858 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 AP006294.1-201ENST00000415407 339 ntBASIC19.14■□□□□ 0.65
HTTP42858 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.14■□□□□ 0.65
HTTP42858 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 IGHV3-52-201ENST00000519770 353 ntBASIC19.14■□□□□ 0.65
HTTP42858 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HTTP42858 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.14■□□□□ 0.65
HTTP42858 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HTTP42858 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HTTP42858 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.13■□□□□ 0.65
HTTP42858 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.13■□□□□ 0.65
HTTP42858 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms