Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.69■□□□□ 0.9
BRCA1P38398 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.69■□□□□ 0.9
BRCA1P38398 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.69■□□□□ 0.9
BRCA1P38398 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.69■□□□□ 0.9
BRCA1P38398 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.69■□□□□ 0.9
BRCA1P38398 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.69■□□□□ 0.9
BRCA1P38398 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.69■□□□□ 0.9
BRCA1P38398 AC135586.1-201ENST00000539323 574 ntBASIC20.69■□□□□ 0.9
BRCA1P38398 AP005482.1-201ENST00000563722 1273 ntBASIC20.69■□□□□ 0.9
BRCA1P38398 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.69■□□□□ 0.9
BRCA1P38398 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
BRCA1P38398 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
BRCA1P38398 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.68■□□□□ 0.9
BRCA1P38398 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.68■□□□□ 0.9
BRCA1P38398 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.68■□□□□ 0.9
BRCA1P38398 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
BRCA1P38398 AL353705.2-201ENST00000428243 662 ntBASIC20.68■□□□□ 0.9
BRCA1P38398 MTND6P24-201ENST00000440466 518 ntBASIC20.68■□□□□ 0.9
BRCA1P38398 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.68■□□□□ 0.9
BRCA1P38398 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.68■□□□□ 0.9
BRCA1P38398 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.68■□□□□ 0.9
BRCA1P38398 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.68■□□□□ 0.9
BRCA1P38398 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.68■□□□□ 0.9
BRCA1P38398 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
BRCA1P38398 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.68■□□□□ 0.9
BRCA1P38398 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRCA1P38398 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 AC131009.4-201ENST00000624048 1740 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.67■□□□□ 0.9
BRCA1P38398 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
BRCA1P38398 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.67■□□□□ 0.9
BRCA1P38398 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 BCYRN1-201ENST00000418539 200 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 AC093004.1-201ENST00000508850 424 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 AC055876.2-201ENST00000531834 546 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.67■□□□□ 0.9
BRCA1P38398 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.67■□□□□ 0.9
BRCA1P38398 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
BRCA1P38398 AC007541.1-201ENST00000570282 1469 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
BRCA1P38398 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.67■□□□□ 0.9
BRCA1P38398 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.67■□□□□ 0.9
BRCA1P38398 AC022210.1-201ENST00000449856 793 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.67■□□□□ 0.9
BRCA1P38398 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.67■□□□□ 0.9
BRCA1P38398 AC092552.1-201ENST00000547243 906 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRCA1P38398 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.67■□□□□ 0.9
BRCA1P38398 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.67■□□□□ 0.9
BRCA1P38398 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.67■□□□□ 0.9
BRCA1P38398 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.67■□□□□ 0.9
BRCA1P38398 AC084346.2-201ENST00000607097 949 ntBASIC20.67■□□□□ 0.9
BRCA1P38398 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
BRCA1P38398 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 AL035456.1-201ENST00000456064 1369 ntBASIC20.66■□□□□ 0.9
BRCA1P38398 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.66■□□□□ 0.9
BRCA1P38398 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
BRCA1P38398 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.66■□□□□ 0.9
BRCA1P38398 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.66■□□□□ 0.9
BRCA1P38398 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
BRCA1P38398 SLC25A1P3-201ENST00000395415 828 ntBASIC20.66■□□□□ 0.9
BRCA1P38398 AC234783.1-201ENST00000441761 496 ntBASIC20.66■□□□□ 0.9
BRCA1P38398 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.66■□□□□ 0.9
BRCA1P38398 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms