Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.65■□□□□ 0.42
VCANP13611 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.65■□□□□ 0.42
VCANP13611 SLC25A6P2-201ENST00000497974 877 ntBASIC17.65■□□□□ 0.42
VCANP13611 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.65■□□□□ 0.42
VCANP13611 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VCANP13611 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 LINC00982-205ENST00000420957 435 ntBASIC17.65■□□□□ 0.42
VCANP13611 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCANP13611 AC126763.1-201ENST00000552015 2118 ntBASIC17.65■□□□□ 0.42
VCANP13611 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VCANP13611 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.65■□□□□ 0.42
VCANP13611 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.65■□□□□ 0.42
VCANP13611 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
VCANP13611 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VCANP13611 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.64■□□□□ 0.42
VCANP13611 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.64■□□□□ 0.41
VCANP13611 BRWD1P1-201ENST00000401091 371 ntBASIC17.64■□□□□ 0.41
VCANP13611 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.64■□□□□ 0.41
VCANP13611 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.64■□□□□ 0.41
VCANP13611 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.64■□□□□ 0.41
VCANP13611 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.64■□□□□ 0.41
VCANP13611 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.64■□□□□ 0.41
VCANP13611 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VCANP13611 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VCANP13611 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VCANP13611 MIR1247-201ENST00000408206 136 ntBASIC17.64■□□□□ 0.41
VCANP13611 HLA-V-204ENST00000476601 1289 ntBASIC17.64■□□□□ 0.41
VCANP13611 AC135586.1-201ENST00000539323 574 ntBASIC17.64■□□□□ 0.41
VCANP13611 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.64■□□□□ 0.41
VCANP13611 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VCANP13611 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.64■□□□□ 0.41
VCANP13611 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VCANP13611 IGHV3-62-201ENST00000520057 340 ntBASIC17.63■□□□□ 0.41
VCANP13611 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.63■□□□□ 0.41
VCANP13611 AC128714.1-201ENST00000637035 887 ntBASIC17.63■□□□□ 0.41
VCANP13611 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VCANP13611 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 CDC14C-201ENST00000428251 1719 ntBASIC17.63■□□□□ 0.41
VCANP13611 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.63■□□□□ 0.41
VCANP13611 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 AL355334.1-201ENST00000417713 215 ntBASIC17.63■□□□□ 0.41
VCANP13611 C2orf69P2-201ENST00000562032 1123 ntBASIC17.63■□□□□ 0.41
VCANP13611 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.63■□□□□ 0.41
VCANP13611 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.63■□□□□ 0.41
VCANP13611 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
VCANP13611 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.63■□□□□ 0.41
VCANP13611 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.63■□□□□ 0.41
VCANP13611 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
VCANP13611 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 AC073592.8-201ENST00000624126 511 ntBASIC17.63■□□□□ 0.41
VCANP13611 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.63■□□□□ 0.41
VCANP13611 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VCANP13611 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.63■□□□□ 0.41
VCANP13611 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCANP13611 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms