Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 AL590627.1-203ENST00000421194 1026 ntBASIC16.73■□□□□ 0.27
LDLRP01130 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.73■□□□□ 0.27
LDLRP01130 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
LDLRP01130 AC079602.3-201ENST00000623931 403 ntBASIC16.73■□□□□ 0.27
LDLRP01130 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.73■□□□□ 0.27
LDLRP01130 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LDLRP01130 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDLRP01130 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 AL024508.2-201ENST00000607749 1894 ntBASIC16.72■□□□□ 0.27
LDLRP01130 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 MIR662-201ENST00000384847 95 ntBASIC16.72■□□□□ 0.27
LDLRP01130 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.72■□□□□ 0.27
LDLRP01130 KRT16P4-201ENST00000453883 522 ntBASIC16.72■□□□□ 0.27
LDLRP01130 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.72■□□□□ 0.27
LDLRP01130 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.72■□□□□ 0.27
LDLRP01130 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.72■□□□□ 0.27
LDLRP01130 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDLRP01130 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 HOXB1-202ENST00000577092 1414 ntBASIC16.71■□□□□ 0.27
LDLRP01130 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
LDLRP01130 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
LDLRP01130 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LDLRP01130 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.71■□□□□ 0.27
LDLRP01130 TSPY12P-201ENST00000421279 868 ntBASIC16.71■□□□□ 0.27
LDLRP01130 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.71■□□□□ 0.27
LDLRP01130 AC009065.1-201ENST00000564055 1225 ntBASIC16.71■□□□□ 0.27
LDLRP01130 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.71■□□□□ 0.27
LDLRP01130 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.71■□□□□ 0.27
LDLRP01130 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDLRP01130 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LDLRP01130 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms