Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 AL121761.2-201ENST00000598007 1648 ntBASIC17.42■□□□□ 0.38
TRIM38O00635 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM38O00635 AC011676.5-201ENST00000624864 2660 ntBASIC17.42■□□□□ 0.38
TRIM38O00635 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM38O00635 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM38O00635 RNA5SP415-201ENST00000517246 115 ntBASIC17.41■□□□□ 0.38
TRIM38O00635 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM38O00635 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.41■□□□□ 0.38
TRIM38O00635 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 MTDHP4-201ENST00000600287 670 ntBASIC17.41■□□□□ 0.38
TRIM38O00635 AL356488.2-201ENST00000602755 427 ntBASIC17.41■□□□□ 0.38
TRIM38O00635 AC008735.5-201ENST00000623544 497 ntBASIC17.41■□□□□ 0.38
TRIM38O00635 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM38O00635 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM38O00635 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM38O00635 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRIM38O00635 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TRIM38O00635 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.4■□□□□ 0.38
TRIM38O00635 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 MED15P5-201ENST00000423150 992 ntBASIC17.4■□□□□ 0.38
TRIM38O00635 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.4■□□□□ 0.38
TRIM38O00635 AC092183.1-201ENST00000469884 875 ntBASIC17.4■□□□□ 0.38
TRIM38O00635 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM38O00635 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 Z83851.2-201ENST00000609564 659 ntBASIC17.4■□□□□ 0.38
TRIM38O00635 AP000867.4-201ENST00000641616 219 ntBASIC17.4■□□□□ 0.38
TRIM38O00635 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
TRIM38O00635 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TRIM38O00635 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM38O00635 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM38O00635 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms