Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 EGFEM1P-202ENST00000431685 1563 ntBASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 UPK3BP1-201ENST00000428678 509 ntBASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 AC124947.2-201ENST00000547118 1133 ntBASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 AL591684.3-201ENST00000605187 298 ntBASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS9D1Q9Y2B5 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
VPS9D1Q9Y2B5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS9D1Q9Y2B5 SIGLEC16-201ENST00000599858 1437 ntBASIC17.21■□□□□ 0.34
VPS9D1Q9Y2B5 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VPS9D1Q9Y2B5 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS9D1Q9Y2B5 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SLC25A1P3-201ENST00000395415 828 ntBASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SPDYE21P-201ENST00000413323 827 ntBASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 AC132872.1-201ENST00000566986 1195 ntBASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 AC137695.1-201ENST00000604126 489 ntBASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms