Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 AC112191.1-201ENST00000523689 701 ntBASIC17.73■□□□□ 0.43
TDP1Q9NUW8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 AC027612.4-201ENST00000605371 583 ntBASIC17.73■□□□□ 0.43
TDP1Q9NUW8 REXO1L3P-201ENST00000622202 1288 ntBASIC17.73■□□□□ 0.43
TDP1Q9NUW8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TDP1Q9NUW8 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 AL645939.2-201ENST00000427340 991 ntBASIC17.72■□□□□ 0.43
TDP1Q9NUW8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RFPL4AP1-201ENST00000530883 850 ntBASIC17.72■□□□□ 0.43
TDP1Q9NUW8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 AL513210.1-201ENST00000629608 234 ntBASIC17.72■□□□□ 0.43
TDP1Q9NUW8 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TDP1Q9NUW8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.71■□□□□ 0.43
TDP1Q9NUW8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 AC107918.2-201ENST00000530817 355 ntBASIC17.71■□□□□ 0.43
TDP1Q9NUW8 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 AC004835.2-201ENST00000603762 682 ntBASIC17.71■□□□□ 0.43
TDP1Q9NUW8 AC105339.1-204ENST00000636249 355 ntBASIC17.71■□□□□ 0.43
TDP1Q9NUW8 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TDP1Q9NUW8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TDP1Q9NUW8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
TDP1Q9NUW8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.42
TDP1Q9NUW8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms