Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 LINC00982-205ENST00000420957 435 ntBASIC18.53■□□□□ 0.56
SIX2Q9NPC8 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 AL118508.1-201ENST00000613502 2345 ntBASIC18.52■□□□□ 0.56
SIX2Q9NPC8 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 BX005266.1-201ENST00000473402 457 ntBASIC18.52■□□□□ 0.56
SIX2Q9NPC8 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX2Q9NPC8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SIX2Q9NPC8 PCDHB17P-201ENST00000539533 2393 ntBASIC18.52■□□□□ 0.55
SIX2Q9NPC8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 PCDHA14-201ENST00000506751 2298 ntBASIC18.51■□□□□ 0.55
SIX2Q9NPC8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX2Q9NPC8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.5■□□□□ 0.55
SIX2Q9NPC8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX2Q9NPC8 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms