Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.33■□□□□ 0.04
MMP28Q9H239 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
MMP28Q9H239 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.33■□□□□ 0.04
MMP28Q9H239 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.33■□□□□ 0.04
MMP28Q9H239 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MMP28Q9H239 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 RNF216P1-203ENST00000404404 2427 ntBASIC15.33■□□□□ 0.04
MMP28Q9H239 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MMP28Q9H239 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
MMP28Q9H239 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.32■□□□□ 0.04
MMP28Q9H239 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.32■□□□□ 0.04
MMP28Q9H239 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC15.32■□□□□ 0.04
MMP28Q9H239 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 RN7SL850P-201ENST00000579959 291 ntBASIC15.32■□□□□ 0.04
MMP28Q9H239 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.32■□□□□ 0.04
MMP28Q9H239 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.32■□□□□ 0.04
MMP28Q9H239 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.32■□□□□ 0.04
MMP28Q9H239 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.32■□□□□ 0.04
MMP28Q9H239 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MMP28Q9H239 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MMP28Q9H239 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 AC100803.2-201ENST00000562459 1963 ntBASIC15.31■□□□□ 0.04
MMP28Q9H239 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.31■□□□□ 0.04
MMP28Q9H239 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
MMP28Q9H239 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.31■□□□□ 0.04
MMP28Q9H239 TSPY17P-201ENST00000450329 467 ntBASIC15.31■□□□□ 0.04
MMP28Q9H239 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 NAPSB-206ENST00000562112 1266 ntBASIC15.31■□□□□ 0.04
MMP28Q9H239 AC116562.4-202ENST00000641738 218 ntBASIC15.31■□□□□ 0.04
MMP28Q9H239 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
MMP28Q9H239 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MMP28Q9H239 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.31■□□□□ 0.04
MMP28Q9H239 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
MMP28Q9H239 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MMP28Q9H239 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms