Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 MIR4453-201ENST00000584019 89 ntBASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 AC073592.8-201ENST00000624126 511 ntBASIC22.09■■□□□ 1.13
SHANK3Q9BYB0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC22.08■■□□□ 1.13
SHANK3Q9BYB0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 AL138828.2-201ENST00000615812 383 ntBASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 AL590560.3-201ENST00000623350 461 ntBASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.08■■□□□ 1.12
SHANK3Q9BYB0 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AC022144.1-201ENST00000602255 1580 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AL355312.1-201ENST00000407115 2176 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AC105233.2-201ENST00000523697 349 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AF228730.5-201ENST00000530288 346 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AC007967.4-201ENST00000614700 386 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 BICD1-207ENST00000551848 1962 ntBASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHANK3Q9BYB0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 MIR346-201ENST00000362234 95 ntBASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 IGHV3-62-201ENST00000520057 340 ntBASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 WASH4P-201ENST00000564273 1246 ntBASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK3Q9BYB0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 AC131009.4-201ENST00000624048 1740 ntBASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 AC009477.1-201ENST00000452936 217 ntBASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC22.05■■□□□ 1.12
SHANK3Q9BYB0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms