Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HERPUD2Q9BSE4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HERPUD2Q9BSE4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
HERPUD2Q9BSE4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 PCDH8P1-201ENST00000428983 2773 ntBASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 NPAP1P7-201ENST00000613027 823 ntBASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 NSUN5P1-202ENST00000421140 1535 ntBASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 NSUN5P2-203ENST00000457352 1529 ntBASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 AC079328.2-201ENST00000561241 3354 ntBASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HERPUD2Q9BSE4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 KRT17P6-201ENST00000453795 1220 ntBASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 PMPCAP1-201ENST00000508114 1576 ntBASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HERPUD2Q9BSE4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
HERPUD2Q9BSE4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
HERPUD2Q9BSE4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.46
HERPUD2Q9BSE4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 AC003669.1-201ENST00000334569 611 ntBASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 KLF4P1-201ENST00000412782 1185 ntBASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.89■□□□□ 0.45
HERPUD2Q9BSE4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms