Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 COX5BP2-201ENST00000392354 334 ntBASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 LINC01238-205ENST00000567549 1107 ntBASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 AC087388.1-201ENST00000571370 1112 ntBASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 AC124864.1-201ENST00000623408 392 ntBASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 AC079328.2-201ENST00000561241 3354 ntBASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 AC011498.5-201ENST00000592027 486 ntBASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM56Q9BRZ2 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 AC125634.1-201ENST00000438758 1403 ntBASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM56Q9BRZ2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms