Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
PTCHD1Q96NR3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTCHD1Q96NR3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.33■□□□□ 0.21
PTCHD1Q96NR3 AC097637.2-201ENST00000624096 1997 ntBASIC16.33■□□□□ 0.21
PTCHD1Q96NR3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AC139887.3-201ENST00000568585 713 ntBASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AC107918.4-202ENST00000641623 219 ntBASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD1Q96NR3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 LAGE3P1-201ENST00000425356 484 ntBASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 AL589182.2-201ENST00000619332 1049 ntBASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 FAM215A-202ENST00000632077 792 ntBASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 AC139713.2-201ENST00000641328 2723 ntBASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD1Q96NR3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 NCF1C-201ENST00000438382 1427 ntBASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms