Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 AC012313.1-201ENST00000593393 3059 ntBASIC20.9■□□□□ 0.94
VPS53Q5VIR6 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS53Q5VIR6 AC106820.2-201ENST00000563775 3264 ntBASIC20.89■□□□□ 0.93
VPS53Q5VIR6 AC003669.1-201ENST00000334569 611 ntBASIC20.89■□□□□ 0.93
VPS53Q5VIR6 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 STK19B-204ENST00000512515 211 ntBASIC20.89■□□□□ 0.93
VPS53Q5VIR6 AL121912.1-201ENST00000603683 238 ntBASIC20.89■□□□□ 0.93
VPS53Q5VIR6 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS53Q5VIR6 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 SIGLEC16-201ENST00000599858 1437 ntBASIC20.88■□□□□ 0.93
VPS53Q5VIR6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 AC046185.3-201ENST00000623228 1824 ntBASIC20.88■□□□□ 0.93
VPS53Q5VIR6 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 AC004870.1-201ENST00000315132 882 ntBASIC20.88■□□□□ 0.93
VPS53Q5VIR6 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 AL356309.3-201ENST00000624132 1934 ntBASIC20.88■□□□□ 0.93
VPS53Q5VIR6 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
VPS53Q5VIR6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 MYCLP1-201ENST00000372451 1075 ntBASIC20.87■□□□□ 0.93
VPS53Q5VIR6 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 AC148477.8-201ENST00000624298 468 ntBASIC20.87■□□□□ 0.93
VPS53Q5VIR6 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 AC016396.2-201ENST00000562575 1417 ntBASIC20.87■□□□□ 0.93
VPS53Q5VIR6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
VPS53Q5VIR6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms