Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC016396.2-201ENST00000562575 1417 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.29■□□□□ 0.84
RHBDL3P58872 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.29■□□□□ 0.84
RHBDL3P58872 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
RHBDL3P58872 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.29■□□□□ 0.84
RHBDL3P58872 TSEN15P1-201ENST00000423257 515 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 AL645939.2-201ENST00000427340 991 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.29■□□□□ 0.84
RHBDL3P58872 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.29■□□□□ 0.84
RHBDL3P58872 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
RHBDL3P58872 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.29■□□□□ 0.84
RHBDL3P58872 AC005412.3-201ENST00000580309 715 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 AC093028.1-201ENST00000622998 982 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.29■□□□□ 0.84
RHBDL3P58872 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 AC093525.9-201ENST00000624961 1746 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 AL138688.1-201ENST00000624851 1594 ntBASIC20.29■□□□□ 0.84
RHBDL3P58872 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RHBDL3P58872 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.29■□□□□ 0.84
RHBDL3P58872 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDL3P58872 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDL3P58872 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RHBDL3P58872 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDL3P58872 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 KRT8P48-201ENST00000515599 1220 ntBASIC20.28■□□□□ 0.84
RHBDL3P58872 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC20.28■□□□□ 0.84
RHBDL3P58872 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.28■□□□□ 0.84
RHBDL3P58872 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.28■□□□□ 0.84
RHBDL3P58872 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDL3P58872 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDL3P58872 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDL3P58872 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDL3P58872 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDL3P58872 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RHBDL3P58872 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.27■□□□□ 0.84
RHBDL3P58872 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.27■□□□□ 0.84
RHBDL3P58872 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.27■□□□□ 0.84
RHBDL3P58872 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.27■□□□□ 0.84
RHBDL3P58872 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.27■□□□□ 0.84
RHBDL3P58872 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDL3P58872 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.27■□□□□ 0.84
RHBDL3P58872 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.27■□□□□ 0.83
RHBDL3P58872 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RHBDL3P58872 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
RHBDL3P58872 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 AL671277.1-201ENST00000429656 993 ntBASIC20.26■□□□□ 0.83
RHBDL3P58872 HLA-J-203ENST00000494367 1087 ntBASIC20.26■□□□□ 0.83
RHBDL3P58872 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.26■□□□□ 0.83
RHBDL3P58872 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDL3P58872 AC026120.1-201ENST00000611536 926 ntBASIC20.26■□□□□ 0.83
RHBDL3P58872 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDL3P58872 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms