Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CLRN1P58418 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.49■□□□□ 0.07
CLRN1P58418 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.49■□□□□ 0.07
CLRN1P58418 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 AP001094.4-201ENST00000579008 2176 ntBASIC15.49■□□□□ 0.07
CLRN1P58418 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CLRN1P58418 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.49■□□□□ 0.07
CLRN1P58418 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.48■□□□□ 0.07
CLRN1P58418 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.48■□□□□ 0.07
CLRN1P58418 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.48■□□□□ 0.07
CLRN1P58418 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 AC138894.3-201ENST00000603787 634 ntBASIC15.48■□□□□ 0.07
CLRN1P58418 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.48■□□□□ 0.07
CLRN1P58418 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN1P58418 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN1P58418 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN1P58418 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CLRN1P58418 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.47■□□□□ 0.07
CLRN1P58418 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.47■□□□□ 0.07
CLRN1P58418 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.47■□□□□ 0.07
CLRN1P58418 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.47■□□□□ 0.07
CLRN1P58418 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.47■□□□□ 0.07
CLRN1P58418 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 AC009336.1-201ENST00000608941 1553 ntBASIC15.47■□□□□ 0.07
CLRN1P58418 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 AD001527.2-201ENST00000622994 785 ntBASIC15.47■□□□□ 0.07
CLRN1P58418 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN1P58418 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CLRN1P58418 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN1P58418 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.46■□□□□ 0.07
CLRN1P58418 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms