Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VCPP55072 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.53■□□□□ 0.56
VCPP55072 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.53■□□□□ 0.56
VCPP55072 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VCPP55072 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VCPP55072 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.53■□□□□ 0.56
VCPP55072 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.53■□□□□ 0.56
VCPP55072 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.53■□□□□ 0.56
VCPP55072 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.53■□□□□ 0.56
VCPP55072 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.53■□□□□ 0.56
VCPP55072 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.53■□□□□ 0.56
VCPP55072 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VCPP55072 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 AC133963.1-201ENST00000504166 1679 ntBASIC18.53■□□□□ 0.56
VCPP55072 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
VCPP55072 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VCPP55072 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VCPP55072 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCPP55072 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VCPP55072 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCPP55072 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
VCPP55072 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 AC112698.1-201ENST00000510299 916 ntBASIC18.52■□□□□ 0.56
VCPP55072 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.52■□□□□ 0.56
VCPP55072 AC105339.3-201ENST00000560043 636 ntBASIC18.52■□□□□ 0.56
VCPP55072 AC005829.1-201ENST00000570002 483 ntBASIC18.52■□□□□ 0.56
VCPP55072 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.52■□□□□ 0.56
VCPP55072 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.52■□□□□ 0.56
VCPP55072 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.52■□□□□ 0.56
VCPP55072 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VCPP55072 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCPP55072 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCPP55072 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.52■□□□□ 0.55
VCPP55072 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.52■□□□□ 0.55
VCPP55072 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VCPP55072 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCPP55072 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 INTS4P1-201ENST00000438455 1935 ntBASIC18.51■□□□□ 0.55
VCPP55072 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 AC009947.1-201ENST00000444350 727 ntBASIC18.51■□□□□ 0.55
VCPP55072 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 SPCS2P1-201ENST00000561636 679 ntBASIC18.51■□□□□ 0.55
VCPP55072 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 MIR4469-201ENST00000583919 79 ntBASIC18.51■□□□□ 0.55
VCPP55072 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VCPP55072 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCPP55072 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
VCPP55072 AL356309.3-201ENST00000624132 1934 ntBASIC18.51■□□□□ 0.55
VCPP55072 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.5■□□□□ 0.55
VCPP55072 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms