Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A4P53420 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A4P53420 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL4A4P53420 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A4P53420 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A4P53420 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A4P53420 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A4P53420 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
COL4A4P53420 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL4A4P53420 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
COL4A4P53420 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A4P53420 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 GNAS-203ENST00000306120 1878 ntBASIC18.32■□□□□ 0.52
COL4A4P53420 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A4P53420 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A4P53420 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A4P53420 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 RBPMS2P1-201ENST00000437762 623 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A4P53420 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.31■□□□□ 0.52
COL4A4P53420 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A4P53420 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A4P53420 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A4P53420 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
COL4A4P53420 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A4P53420 AL138688.1-201ENST00000624851 1594 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A4P53420 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A4P53420 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL4A4P53420 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A4P53420 AC134043.2-201ENST00000624206 2238 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 AL512356.2-201ENST00000546955 174 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 AC243562.1-201ENST00000560672 389 ntBASIC18.31■□□□□ 0.52
COL4A4P53420 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A4P53420 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A4P53420 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A4P53420 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.3■□□□□ 0.52
COL4A4P53420 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 AC008677.1-201ENST00000519230 1561 ntBASIC18.3■□□□□ 0.52
COL4A4P53420 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 SERBP1P5-201ENST00000510079 1181 ntBASIC18.3■□□□□ 0.52
COL4A4P53420 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A4P53420 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A4P53420 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 AC010336.2-201ENST00000564226 506 ntBASIC18.3■□□□□ 0.52
COL4A4P53420 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A4P53420 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
COL4A4P53420 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A4P53420 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A4P53420 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms