Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.92■□□□□ 0.78
CTCFP49711 ALG1L8P-201ENST00000533887 760 ntBASIC19.92■□□□□ 0.78
CTCFP49711 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.92■□□□□ 0.78
CTCFP49711 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.92■□□□□ 0.78
CTCFP49711 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
CTCFP49711 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CTCFP49711 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.92■□□□□ 0.78
CTCFP49711 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.92■□□□□ 0.78
CTCFP49711 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.91■□□□□ 0.78
CTCFP49711 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.91■□□□□ 0.78
CTCFP49711 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.91■□□□□ 0.78
CTCFP49711 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.91■□□□□ 0.78
CTCFP49711 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.91■□□□□ 0.78
CTCFP49711 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.91■□□□□ 0.78
CTCFP49711 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 AL161645.1-201ENST00000622716 1255 ntBASIC19.91■□□□□ 0.78
CTCFP49711 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.91■□□□□ 0.78
CTCFP49711 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 AL161938.1-201ENST00000569833 2180 ntBASIC19.91■□□□□ 0.78
CTCFP49711 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTCFP49711 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.91■□□□□ 0.78
CTCFP49711 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CTCFP49711 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
CTCFP49711 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.9■□□□□ 0.78
CTCFP49711 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.9■□□□□ 0.78
CTCFP49711 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
CTCFP49711 AP005482.1-201ENST00000563722 1273 ntBASIC19.9■□□□□ 0.78
CTCFP49711 MIR4453-201ENST00000584019 89 ntBASIC19.9■□□□□ 0.78
CTCFP49711 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CTCFP49711 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.9■□□□□ 0.78
CTCFP49711 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CTCFP49711 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTCFP49711 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.9■□□□□ 0.78
CTCFP49711 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTCFP49711 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
CTCFP49711 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CTCFP49711 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CTCFP49711 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.89■□□□□ 0.77
CTCFP49711 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CTCFP49711 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CTCFP49711 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CTCFP49711 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.89■□□□□ 0.77
CTCFP49711 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CTCFP49711 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms