Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CDX1P47902 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CDX1P47902 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 CHCHD2P8-201ENST00000429873 447 ntBASIC14.19□□□□□ -0.14
CDX1P47902 HCG4P8-203ENST00000443049 980 ntBASIC14.19□□□□□ -0.14
CDX1P47902 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CDX1P47902 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 KRT18P56-201ENST00000507275 550 ntBASIC14.19□□□□□ -0.14
CDX1P47902 RNF126P1-202ENST00000569893 925 ntBASIC14.19□□□□□ -0.14
CDX1P47902 AC090616.6-201ENST00000582640 721 ntBASIC14.19□□□□□ -0.14
CDX1P47902 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.19□□□□□ -0.14
CDX1P47902 AC005332.3-201ENST00000589904 676 ntBASIC14.19□□□□□ -0.14
CDX1P47902 GPR32P1-201ENST00000601788 811 ntBASIC14.19□□□□□ -0.14
CDX1P47902 NPAP1P7-201ENST00000613027 823 ntBASIC14.19□□□□□ -0.14
CDX1P47902 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
CDX1P47902 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CDX1P47902 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.18□□□□□ -0.14
CDX1P47902 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CDX1P47902 IGHGP-201ENST00000390555 1178 ntBASIC14.18□□□□□ -0.14
CDX1P47902 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.18□□□□□ -0.14
CDX1P47902 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.18□□□□□ -0.14
CDX1P47902 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.18□□□□□ -0.14
CDX1P47902 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.18□□□□□ -0.14
CDX1P47902 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.18□□□□□ -0.14
CDX1P47902 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.18□□□□□ -0.14
CDX1P47902 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.18□□□□□ -0.14
CDX1P47902 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.18□□□□□ -0.14
CDX1P47902 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 Z83836.1-201ENST00000624605 1642 ntBASIC14.18□□□□□ -0.14
CDX1P47902 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.18□□□□□ -0.14
CDX1P47902 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.18□□□□□ -0.14
CDX1P47902 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDX1P47902 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.17□□□□□ -0.14
CDX1P47902 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms