Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 RNA5SP419-201ENST00000515908 135 ntBASIC18.84■□□□□ 0.61
HOXD13P35453 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXD13P35453 AP002469.2-201ENST00000531724 424 ntBASIC18.84■□□□□ 0.61
HOXD13P35453 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXD13P35453 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXD13P35453 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.84■□□□□ 0.61
HOXD13P35453 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXD13P35453 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXD13P35453 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.84■□□□□ 0.61
HOXD13P35453 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXD13P35453 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXD13P35453 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXD13P35453 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXD13P35453 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXD13P35453 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXD13P35453 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXD13P35453 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXD13P35453 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXD13P35453 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HOXD13P35453 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXD13P35453 NKILA-202ENST00000614771 2598 ntBASIC18.83■□□□□ 0.6
HOXD13P35453 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 MRPL3P1-201ENST00000400109 1033 ntBASIC18.83■□□□□ 0.6
HOXD13P35453 ELK2BP-201ENST00000415014 1224 ntBASIC18.83■□□□□ 0.6
HOXD13P35453 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXD13P35453 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
HOXD13P35453 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
HOXD13P35453 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXD13P35453 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.83■□□□□ 0.6
HOXD13P35453 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HOXD13P35453 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
HOXD13P35453 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXD13P35453 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXD13P35453 RNF216P1-203ENST00000404404 2427 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HOXD13P35453 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXD13P35453 AC004870.1-201ENST00000315132 882 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXD13P35453 PTCHD3P3-201ENST00000403073 906 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 LAGE3P1-201ENST00000425356 484 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 FAAHP1-202ENST00000446499 1238 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.82■□□□□ 0.6
HOXD13P35453 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXD13P35453 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.82■□□□□ 0.6
HOXD13P35453 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.82■□□□□ 0.6
HOXD13P35453 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
HOXD13P35453 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXD13P35453 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 AC011676.5-201ENST00000624864 2660 ntBASIC18.82■□□□□ 0.6
HOXD13P35453 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD13P35453 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD13P35453 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 AC243591.1-201ENST00000452967 1364 ntBASIC18.81■□□□□ 0.6
HOXD13P35453 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HOXD13P35453 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HOXD13P35453 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXD13P35453 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXD13P35453 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD13P35453 KRT18P67-201ENST00000432816 1264 ntBASIC18.81■□□□□ 0.6
HOXD13P35453 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD13P35453 AL160237.2-201ENST00000556165 472 ntBASIC18.81■□□□□ 0.6
HOXD13P35453 AL049840.3-201ENST00000602669 611 ntBASIC18.81■□□□□ 0.6
HOXD13P35453 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD13P35453 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD13P35453 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms