Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 AC113347.1-201ENST00000413321 391 ntBASIC15.22■□□□□ 0.03
ATF1P18846 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.22■□□□□ 0.03
ATF1P18846 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.22■□□□□ 0.03
ATF1P18846 YBX1P2-201ENST00000489612 999 ntBASIC15.22■□□□□ 0.03
ATF1P18846 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.22■□□□□ 0.03
ATF1P18846 AC139887.4-201ENST00000607877 719 ntBASIC15.22■□□□□ 0.03
ATF1P18846 AC133561.5-201ENST00000635547 218 ntBASIC15.22■□□□□ 0.03
ATF1P18846 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ATF1P18846 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.22■□□□□ 0.03
ATF1P18846 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.22■□□□□ 0.03
ATF1P18846 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 AC092068.3-201ENST00000587894 2016 ntBASIC15.22■□□□□ 0.03
ATF1P18846 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.22■□□□□ 0.03
ATF1P18846 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATF1P18846 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ATF1P18846 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
ATF1P18846 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.21■□□□□ 0.03
ATF1P18846 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.21■□□□□ 0.03
ATF1P18846 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.21■□□□□ 0.03
ATF1P18846 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ATF1P18846 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.21■□□□□ 0.03
ATF1P18846 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.21■□□□□ 0.03
ATF1P18846 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.21■□□□□ 0.03
ATF1P18846 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.21■□□□□ 0.03
ATF1P18846 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.21■□□□□ 0.03
ATF1P18846 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.21■□□□□ 0.03
ATF1P18846 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
ATF1P18846 AL596257.1-201ENST00000641463 2694 ntBASIC15.21■□□□□ 0.03
ATF1P18846 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.21■□□□□ 0.03
ATF1P18846 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATF1P18846 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.21■□□□□ 0.02
ATF1P18846 AL353692.3-201ENST00000407031 1396 ntBASIC15.21■□□□□ 0.02
ATF1P18846 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ATF1P18846 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
ATF1P18846 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATF1P18846 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
ATF1P18846 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ATF1P18846 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATF1P18846 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.02
ATF1P18846 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.02
ATF1P18846 AL662844.4-201ENST00000606367 2838 ntBASIC15.21■□□□□ 0.02
ATF1P18846 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
ATF1P18846 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
ATF1P18846 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ATF1P18846 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.2■□□□□ 0.02
ATF1P18846 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
ATF1P18846 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATF1P18846 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms