Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AL671277.2-201ENST00000458060 996 ntBASIC17.12■□□□□ 0.33
COL6A2P12110 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A2P12110 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.12■□□□□ 0.33
COL6A2P12110 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
COL6A2P12110 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A2P12110 LINC01238-205ENST00000567549 1107 ntBASIC17.12■□□□□ 0.33
COL6A2P12110 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A2P12110 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A2P12110 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL6A2P12110 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A2P12110 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A2P12110 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A2P12110 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A2P12110 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.11■□□□□ 0.33
COL6A2P12110 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 AC009336.1-201ENST00000608941 1553 ntBASIC17.11■□□□□ 0.33
COL6A2P12110 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A2P12110 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A2P12110 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 AC009533.2-201ENST00000543664 586 ntBASIC17.11■□□□□ 0.33
COL6A2P12110 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A2P12110 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A2P12110 IGHV3-41-201ENST00000613121 348 ntBASIC17.11■□□□□ 0.33
COL6A2P12110 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A2P12110 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A2P12110 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL6A2P12110 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 OR6D1P-203ENST00000641209 4860 ntBASIC17.1■□□□□ 0.33
COL6A2P12110 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL6A2P12110 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.1■□□□□ 0.33
COL6A2P12110 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 STK19B-204ENST00000512515 211 ntBASIC17.1■□□□□ 0.33
COL6A2P12110 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 AC022616.7-201ENST00000525383 220 ntBASIC17.1■□□□□ 0.33
COL6A2P12110 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 AC011498.5-201ENST00000592027 486 ntBASIC17.1■□□□□ 0.33
COL6A2P12110 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms