Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC13.46□□□□□ -0.25
CXCL1P09341 AC142086.2-201ENST00000569753 217 ntBASIC13.46□□□□□ -0.25
CXCL1P09341 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.46□□□□□ -0.25
CXCL1P09341 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CXCL1P09341 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CXCL1P09341 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.46□□□□□ -0.26
CXCL1P09341 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CXCL1P09341 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CXCL1P09341 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CXCL1P09341 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
CXCL1P09341 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.46□□□□□ -0.26
CXCL1P09341 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.46□□□□□ -0.26
CXCL1P09341 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
CXCL1P09341 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 AC006058.4-201ENST00000624016 1670 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 MIR149-201ENST00000384879 89 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 KRASP1-201ENST00000407852 552 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 AL353807.1-201ENST00000427475 662 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 MAP2K4P1-201ENST00000438453 1195 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 AC133681.1-201ENST00000465482 601 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 AP003097.1-201ENST00000530657 1135 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC13.45□□□□□ -0.26
CXCL1P09341 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC13.45□□□□□ -0.26
CXCL1P09341 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 GAMT-205ENST00000640762 751 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
CXCL1P09341 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.45□□□□□ -0.26
CXCL1P09341 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC13.45□□□□□ -0.26
CXCL1P09341 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 AC016396.2-201ENST00000562575 1417 ntBASIC13.45□□□□□ -0.26
CXCL1P09341 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CXCL1P09341 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CXCL1P09341 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.44□□□□□ -0.26
CXCL1P09341 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
CXCL1P09341 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.44□□□□□ -0.26
CXCL1P09341 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.44□□□□□ -0.26
CXCL1P09341 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
CXCL1P09341 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.44□□□□□ -0.26
CXCL1P09341 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CXCL1P09341 MCCD1P1-208ENST00000445732 328 ntBASIC13.44□□□□□ -0.26
CXCL1P09341 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC13.44□□□□□ -0.26
CXCL1P09341 AC011298.2-201ENST00000617989 482 ntBASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms