Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.17■□□□□ 0.5
RB1P06400 AC069120.2-201ENST00000524091 540 ntBASIC18.17■□□□□ 0.5
RB1P06400 AC027307.3-201ENST00000594262 1100 ntBASIC18.17■□□□□ 0.5
RB1P06400 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RB1P06400 AL390754.1-201ENST00000619088 582 ntBASIC18.17■□□□□ 0.5
RB1P06400 AL358472.5-202ENST00000641448 1267 ntBASIC18.17■□□□□ 0.5
RB1P06400 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 FLJ13224-201ENST00000313737 1514 ntBASIC18.17■□□□□ 0.5
RB1P06400 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 AC012569.1-201ENST00000591191 1524 ntBASIC18.17■□□□□ 0.5
RB1P06400 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.17■□□□□ 0.5
RB1P06400 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RB1P06400 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RB1P06400 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RB1P06400 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RB1P06400 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.16■□□□□ 0.5
RB1P06400 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.16■□□□□ 0.5
RB1P06400 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RB1P06400 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RB1P06400 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.16■□□□□ 0.5
RB1P06400 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
RB1P06400 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 LINC01451-201ENST00000623792 534 ntBASIC18.16■□□□□ 0.5
RB1P06400 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RB1P06400 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RB1P06400 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RB1P06400 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.15■□□□□ 0.5
RB1P06400 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.15■□□□□ 0.5
RB1P06400 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.15■□□□□ 0.5
RB1P06400 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
RB1P06400 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.15■□□□□ 0.5
RB1P06400 AC097493.3-201ENST00000509725 367 ntBASIC18.15■□□□□ 0.5
RB1P06400 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 CR383656.12-201ENST00000549567 513 ntBASIC18.15■□□□□ 0.5
RB1P06400 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.15■□□□□ 0.5
RB1P06400 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.15■□□□□ 0.5
RB1P06400 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.15■□□□□ 0.5
RB1P06400 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RB1P06400 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.15■□□□□ 0.5
RB1P06400 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.14■□□□□ 0.5
RB1P06400 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
RB1P06400 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
RB1P06400 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
RB1P06400 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RB1P06400 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RB1P06400 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
RB1P06400 REXO1L11P-201ENST00000620964 1927 ntBASIC18.14■□□□□ 0.49
RB1P06400 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.14■□□□□ 0.49
RB1P06400 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RB1P06400 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RB1P06400 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.14■□□□□ 0.49
RB1P06400 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.14■□□□□ 0.49
RB1P06400 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms