Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.61■□□□□ 0.25
SEMA3DO95025 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SEMA3DO95025 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SEMA3DO95025 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.6■□□□□ 0.25
SEMA3DO95025 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 SLC25A1P3-201ENST00000395415 828 ntBASIC16.6■□□□□ 0.25
SEMA3DO95025 UPK3BP1-201ENST00000428678 509 ntBASIC16.6■□□□□ 0.25
SEMA3DO95025 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.6■□□□□ 0.25
SEMA3DO95025 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.6■□□□□ 0.25
SEMA3DO95025 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.6■□□□□ 0.25
SEMA3DO95025 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.6■□□□□ 0.25
SEMA3DO95025 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.6■□□□□ 0.25
SEMA3DO95025 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.6■□□□□ 0.25
SEMA3DO95025 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.6■□□□□ 0.25
SEMA3DO95025 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SEMA3DO95025 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.59■□□□□ 0.25
SEMA3DO95025 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.59■□□□□ 0.25
SEMA3DO95025 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.59■□□□□ 0.25
SEMA3DO95025 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.59■□□□□ 0.25
SEMA3DO95025 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 AP000867.4-201ENST00000641616 219 ntBASIC16.59■□□□□ 0.25
SEMA3DO95025 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SEMA3DO95025 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SEMA3DO95025 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.59■□□□□ 0.25
SEMA3DO95025 AC093525.9-201ENST00000624961 1746 ntBASIC16.59■□□□□ 0.25
SEMA3DO95025 CROCCP1-201ENST00000426910 5675 ntBASIC16.59■□□□□ 0.25
SEMA3DO95025 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
SEMA3DO95025 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms